Links
Database Searching
- NCBI
- Human Genome Resources at NCBI
- Ensembl Genome Browser
- HUGO Gene Nomenclature Committee
- The IUPHAR Compendium of Voltage-gated Ion Channels
- The Genome Database
- VectorDB - Molecular Biology Vector Sequence Database
- Restriction Enzyme Database (REBASE)
- Fasta Search Form
- Hapmap
- Blast Search Form (NCBI)
- eTBlast (Blast Medline!!)
- Search PROSITE (ExPASy)
- Pattern search (french)
- Single nucleotide Polymorphism Database
- The Mammalian Gene Collection
- TIGR Mouse Gene Index
- VISTA
- Mouse Genome Informatics (Jackson Laboratories)
- The Rat Genome Database (RatMap)
- The Protein Data Bank
- NHLBI Programs for Genomic Applications
- BRENDA (enzyme database)
Analysis
-
Nucleotide Sequences
- Gene Discovery Page
- IUPAC Codes
- Sequence Manipulation Suite
- The Genetic Code
- Database of Codon Usage
- JustBio
- Genefisher: Interactive Primer Design
- Primer 3
- Oligo Calculator
- Web Cutter
- NEBcutter (New England Biolabs)
- WWWtacg (restriction analysis)
- WatCut (restriction analysis)
- Poly-A prediction in Eukaryotic Genes
- Splice Site Prediction
- Promoter Scan
- Signal sequences scan
- Neural Network Promoter Prediction
- ORF Finder
- ClustalW Multiple Sequence Alignment
- BoxShade
- BCM Sequence Utilities
- BioMath Calculators
- siRNA Target Finder (GenScript)
- siRNA Construct Builder (GenScript)
-
Protein Sequences
- Amino Acid Information Form
- ProtScale
- Procite (ExPASy)
- Protein: theoretical isoelectric point and molecular weight
- PSORT: Protein Localization Sites
- Secondary Structure Prediction of Membrane Proteins
- Prediction of Transmembrane Helices in Membrane Proteins
- Prediction of Phosphorylation Sites (NetPhos)
- ClustalW Multiple Sequence Alignment
- BoxShade
- Hydrophobicity Profile
- Network Protein Sequence Analysis (PBIL)
- NCSA Biology Workbench
- Peptide Antibody Design (Abie)
-
Reference and Utilities
- Martindale's 'The Reference Desk'
- The Molecular Biologist's Desk Reference
- Radioactivity Calculator
- Mouse Genetics: Concepts and Applications. By Lee M. Silver (online book)
- Muscle Specific Regulatory Elements
- Pedro's BioMolecular Research Tools
- Fluorescence Resonance Energy Transfer spectroscopy
- Two-hybrid screening (Lab of Erica Golemis)
Ion Channels
- Potassium Channels
- Ion Channels,
- Transmitters,
- Receptors and Disease
- Ligand Gated Ion Channels
- Patch Clamp Resources
Companies
-
General
Antibodies
- Abcam
- Alomone labs
- BioSource International
- CHEMICON
- Jackson ImmunoResearch
- Molecular Probes
- Sigma Antibody Explorer Web Site
- Santa Cruz Biotechnology
- The Antibody Resource Page
- Novus Biologicals
- Gallus Immunotech
- Upstate
- United States Biological
Molecular Biology
- Amersham Pharmacia
- CLONTECH
- DuPont
- Evrogen
- Genome Systems, Inc.
- Invitrogen
- New England BioLabs
- Novagen
- OriGene Technologies
- Promega
- Stratagene
Patch Clamping/Fluorescence
- Molecular Devices (previously Axon Instruments)
- Leica
- Nikon
- Molecular Probes [online handbook]
- IonOptix
- EXFO (previously Burleigh)
- TMC
- Newport
- Narishige
- Warner Instruments
- World Precision Instruments
- E. W. Wright
- Morrell Instruments
- Dagan Corporation
- Omega Optical
- Chroma
- Sutter Instrument
- Carolina
- HEKA
Protocols
- Protocols Online
- NWFSC
- Molecular Biology Protocols
- The Gietz Lab Yeast Transformation Homepage
- Penn MCRC Histology and Gene Expression Protocols
- American Heart Association
- International Society for Heart Research
- The Biophysical Society
- National Institutes of Health
- GeneDoc
- Prophet (data and sequence analysis)
- Treeview
- ClustalX [helpfile]
- Chromas (Reads sequence files)
- Readseq (Converts between different file formats)
- ImageJ for microscopy
- Scion Image (PC version of NIH Image)
- Rasmol
- Redasoft Plasmid (vector drawing & sequence analysis)
- Macaw (Multiple Alignments)
- Swiss-PdbViewer
- Qub (Single Channel Analysis)
- Cabuf (Calculation of free Ca and Mg in solutions)
- WinASCD (Analysis of pClamp data files)
- X server
